Total sequences
900
| HIV subtyping: COMET | ||
|---|---|---|
| HIV subtype | Number of sequences | Percentage |
| PRRT and Integrase | ||
| 16_A2D | 3 | 0% |
| A1 | 213 | 34% |
| B | 2 | 0% |
| C | 71 | 11% |
| CRF11_cpx | 3 | 0% |
| CRF25_cpx | 3 | 0% |
| CRF45_cpx | 1 | 0% |
| D | 109 | 17% |
| G | 61 | 10% |
| Undetermined | 168 | 26% |
| PRRT only | ||
| 16_A2D | 2 | 4% |
| A1 | 24 | 42% |
| B | 1 | 2% |
| C | 5 | 9% |
| D | 12 | 21% |
| G | 4 | 7% |
| J | 1 | 2% |
| Undetermined | 8 | 14% |
| Integrase only | ||
| A1 | 62 | 30% |
| A2 | 1 | 0% |
| B | 1 | 0% |
| C | 26 | 12% |
| CRF02_AG | 2 | 1% |
| D | 73 | 35% |
| G | 26 | 12% |
| Undetermined | 18 | 9% |
| PMID:25120265* | ||
| HIV subtyping: REGA | ||
|---|---|---|
| HIV subtype | Number of sequences | Percentage |
| PRRT and Integrase | ||
| A1 | 293 | 46% |
| C | 79 | 12% |
| D | 103 | 16% |
| G | 101 | 16% |
| J | 58 | 9% |
| PRRT only | ||
| A1 | 28 | 49% |
| C | 4 | 7% |
| D | 11 | 19% |
| G | 6 | 11% |
| H | 1 | 2% |
| J | 5 | 9% |
| K | 2 | 4% |
| Integrase only | ||
| A1 | 65 | 31% |
| B | 2 | 1% |
| C | 28 | 13% |
| D | 44 | 21% |
| G | 26 | 12% |
| J | 44 | 21% |
Source: PMID: 23660484 |
||
| HIV subtyping: Stanford hivdb | ||
|---|---|---|
| HIV subtype | Number of sequences | Percentage |
| PRRT and Integrase | ||
| A1 | 213 | 34% |
| A2 | 5 | 1% |
| A3 | 2 | 0% |
| A6 | 1 | 0% |
| A7 | 3 | 0% |
| B | 14 | 2% |
| C | 91 | 14% |
| CRF02_AG | 6 | 1% |
| CRF06_cpx | 2 | 0% |
| CRF09_cpx | 41 | 6% |
| CRF11_cpx | 2 | 0% |
| CRF25_cpx | 2 | 0% |
| CRF45_cpx | 18 | 3% |
| D | 156 | 25% |
| G | 75 | 12% |
| J | 2 | 0% |
| Unknown | 1 | 0% |
| PRRT only | ||
| A1 | 18 | 32% |
| A2 | 3 | 5% |
| A6 | 3 | 5% |
| A7 | 1 | 2% |
| B | 4 | 7% |
| C | 5 | 9% |
| CRF11_cpx | 1 | 2% |
| CRF45_cpx | 1 | 2% |
| D | 10 | 18% |
| G | 9 | 16% |
| Unknown | 2 | 4% |
| Integrase only | ||
| A1 | 54 | 26% |
| A2 | 1 | 0% |
| A3 | 1 | 0% |
| B | 11 | 5% |
| C | 29 | 14% |
| CRF01_AE | 2 | 1% |
| CRF02_AG | 16 | 8% |
| CRF06_cpx | 1 | 0% |
| CRF09_cpx | 6 | 3% |
| D | 69 | 33% |
| F | 1 | 0% |
| G | 16 | 8% |
| Unknown | 2 | 1% |
Source: hivdb.stanford.edu/page/hiv-subtyper. |
||
| HIV subtyping: Nearest neightbor (phylogenetics) | ||
|---|---|---|
| HIV subtype | Number of sequences | Percentage |
| PRRT and Integrase | ||
| 02_AG | 71 | 46% |
| 11_cpx | 3 | 2% |
| 13_cpx | 1 | 1% |
| 21_A2D | 1 | 1% |
| 84_A1D | 1 | 1% |
| A2 | 5 | 3% |
| D | 71 | 46% |
| PRRT only | ||
| 02_AG | 9 | 64% |
| 11_cpx | 1 | 7% |
| A2 | 2 | 14% |
| B | 1 | 7% |
| D | 1 | 7% |
| Integrase only | ||
| 02_AG | 13 | 54% |
| 112_01B | 1 | 4% |
| 25_cpx | 1 | 4% |
| D | 9 | 38% |